RNA Workbench 2.0

"RNA Workbench 2.0" is an integrated and updated online resource designed to cater to the evolving demands of RNA-related research in molecular biology. At the heart of gene expression regulation studies, RNA research necessitates a broad suite of analytical tools that seamlessly interface with the plethora of data emerging from various experimental paradigms.

Key Features and Functionalities:

- Comprehensive Tool Collection: RNA Workbench 2.0 aggregates an extensive array of analysis tools and workflows, supporting a wide range of RNA-related research activities, from RNA-Seq experiments to target prediction methods.

- User-Friendly Interface: Designed to focus on accessibility, it eliminates the need for in-depth command-line expertise, enabling researchers to conduct sophisticated analyses through an intuitive web-based interface.

- Integrated Data Analysis Framework: RNA Workbench 2.0 facilitates the holistic integration and interpretation of RNA research findings by consolidating data from diverse experimental approaches within a unified platform.

- Containerized Infrastructure: This update introduces a containerized infrastructure, ensuring that the suite of tools and workflows is not only comprehensive but also robust, portable, and easy to deploy across different computational environments.

- Platform for Training and Data Visualization: Beyond analysis, RNA Workbench 2.0 serves as a resource for hands-on training, data exploration, and visualization, supporting the broader educational needs of the RNA research community.

Topic

RNA-Seq;RNA;RNA immunoprecipitation

Detail

  • Operation: RNA secondary structure prediction;RNA secondary structure alignment;Expression analysis

  • Software interface: Workflow

  • Language: Shell,JavaScript

  • License: The MIT License

  • Cost: Free with restrictions

  • Version name: -

  • Credit: German Federal Ministry of Education and Research, German Research Foundation for the Collaborative Research Center 992 Medical Epigenetics.

  • Input: -

  • Output: -

  • Contact: -

  • Collection: -

  • Maturity: Stable

Publications

  • The RNA workbench 2.0: next generation RNA data analysis.
  • Fallmann J, et al. The RNA workbench 2.0: next generation RNA data analysis. The RNA workbench 2.0: next generation RNA data analysis. 2019; 47:W511-W515. doi: 10.1093/nar/gkz353
  • https://doi.org/10.1093/NAR/GKZ353
  • PMID: 31073612
  • PMC: PMC6602469

Download and documentation


< Back to DB search