RNA Workbench 2.0
"RNA Workbench 2.0" is an integrated and updated online resource designed to cater to the evolving demands of RNA-related research in molecular biology. At the heart of gene expression regulation studies, RNA research necessitates a broad suite of analytical tools that seamlessly interface with the plethora of data emerging from various experimental paradigms.
Key Features and Functionalities:
- Comprehensive Tool Collection: RNA Workbench 2.0 aggregates an extensive array of analysis tools and workflows, supporting a wide range of RNA-related research activities, from RNA-Seq experiments to target prediction methods.
- User-Friendly Interface: Designed to focus on accessibility, it eliminates the need for in-depth command-line expertise, enabling researchers to conduct sophisticated analyses through an intuitive web-based interface.
- Integrated Data Analysis Framework: RNA Workbench 2.0 facilitates the holistic integration and interpretation of RNA research findings by consolidating data from diverse experimental approaches within a unified platform.
- Containerized Infrastructure: This update introduces a containerized infrastructure, ensuring that the suite of tools and workflows is not only comprehensive but also robust, portable, and easy to deploy across different computational environments.
- Platform for Training and Data Visualization: Beyond analysis, RNA Workbench 2.0 serves as a resource for hands-on training, data exploration, and visualization, supporting the broader educational needs of the RNA research community.
Topic
RNA-Seq;RNA;RNA immunoprecipitation
Detail
Operation: RNA secondary structure prediction;RNA secondary structure alignment;Expression analysis
Software interface: Workflow
Language: Shell,JavaScript
License: The MIT License
Cost: Free with restrictions
Version name: -
Credit: German Federal Ministry of Education and Research, German Research Foundation for the Collaborative Research Center 992 Medical Epigenetics.
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Output: -
Contact: -
Collection: -
Maturity: Stable
Publications
- The RNA workbench 2.0: next generation RNA data analysis.
- Fallmann J, et al. The RNA workbench 2.0: next generation RNA data analysis. The RNA workbench 2.0: next generation RNA data analysis. 2019; 47:W511-W515. doi: 10.1093/nar/gkz353
- https://doi.org/10.1093/NAR/GKZ353
- PMID: 31073612
- PMC: PMC6602469
Download and documentation
Source: https://github.com/bgruening/galaxy-rna-workbench/releases
Documentation: https://github.com/bgruening/galaxy-rna-workbench/blob/master/README.md
Home page: https://github.com/bgruening/galaxy-rna-workbench
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